Analytical tool guides

Conda

Manage packages and environments reliably with Conda.

EPACTS

Perform statistical tests for genome-wide association studies (GWAS).

PLINK

Open-source tool for large-scale genomic data analysis and GWAS.

Regenie

Fast whole-genome regression modeling for large GWAS datasets.

Saige

Scalable mixed-model association testing with SAIGE in R.

FSL

Comprehensive tools for fMRI, MRI, and DTI analysis.

Freesurfer

Open-source tools for brain MRI analysis and visualization.

JupyterLab

Interactive notebooks for data analysis, visualization, and code execution.

PyCharm

Develop, debug, and manage Python projects in your lab environment.

Spyder

Develop, debug, and explore Python code in a scientific environment.

R and RStudio

Install, upgrade, and manage R for statistical computing in your lab.

MATLAB

Perform matrix computations and scientific analysis with MATLAB.

Stata

Run Stata for data management, modeling, and epidemiological research.

ITK-SNAP

Interactive segmentation of 3D medical images.